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gtatgttacaaagctaccagctgaattacaaagagatttagacatggacttattgctaacggtaagataatttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTACATCTTCATGGGAGAGAGGGGCTGCTTCTGGGCATGAAGAGGATGCTG
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTEST: gi|71299986|gb|DR786057.1|DR786057
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
EST: GCCTGTTGCCCTTTGA-GATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCGAATTGCTGCTGCCEST: gi|149101985|gb|EE287489.2|EE287489
genomic: GCCTGTTGCCCTT-GAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCC
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTEST: gi|94478604|gb|EB707562.1|EB707562
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGCCTCCA GTTGACCCATGCAAGGATCGAATTGCTGCTGCCCTEST: gi|149102475|gb|EE287839.2|EE287839
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCT
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTEST: gi|148942821|gb|EC887855.2|EC887855
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCAAATTGCTGCTGCCCTGAAGACACTGCGACCTEST: gi|149070989|gb|EE159394.2|EE159394
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCCAGGATCGAATTGCTGCTGCCCTGGAGACACTGEST: gi|148982071|gb|EE028112.2|EE028112
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTG
EST: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCA GTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
genomic: TGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTGGCTCCAgtatgttaca ... ttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCT
tacaaagagatttagacatggacttattgctaacggtaagataatttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTACATCTTCATGGGAGAGAGGGGCTGCTTCTGGGCATGAAGAGGATGCTG
tgctaac putative branch site (score: 87)
taagataatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttacaaagctaccagctgaattacaaagagatttagacatggacttattgctaacggtaagataatttatcggcagGTTGACACATGCAAGGATCGAATTGCTGCTGCCCTGGAGACACTGCGACCTACATCTTCATGGGAGAGAGGGGCTGCTTCTGGGCATGAAGAGGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG