1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttaccttgagtgtaacaatgcttaagttgggtataatttccattcacttcatgataccattgttattgccagctaactcattgcattctctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTATC
species | Zea mays |
transcript | GRMZM2G105772_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|211414766|gb|FL112972.1|FL112972
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTS-ACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCEST: gi|148969759|gb|EE020640.2|EE020640
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|149051783|gb|EE155908.2|EE155908
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|60396086|gb|DN228955.1|DN228955
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|148943103|gb|EC888159.2|EC888159
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|9732269|gb|BE511021.1|BE511021
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|78118533|gb|DV536917.1|DV536917
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|148991633|gb|EE033168.2|EE033168
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|91054260|gb|EB164678.1|EB164678
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|211414779|gb|FL112985.1|FL112985
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTS-AGCCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|21843204|gb|BQ703785.1|BQ703785
genomic: CTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCA-CCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|91876143|gb|EB406100.1|EB406100
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|211414778|gb|FL112984.1|FL112984
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCEST: gi|211414770|gb|FL112976.1|FL112976
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTS-ACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCEST: gi|32910960|gb|CF015772.1|CF015772
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|74240960|gb|DT648874.1|DT648874
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|32861117|gb|CF000799.1|CF000799
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|76011555|gb|DT938725.1|DT938725
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|148956696|gb|EC902566.2|EC902566
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|211412220|gb|FL112964.1|FL112964
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCATCCAGCACCTAT TGTACCTGTCAGTGCACTGEST: gi|149001065|gb|EE038319.2|EE038319
genomic: CTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCA-CCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTG
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|91057192|gb|EB167610.1|EB167610
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTGAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|91878897|gb|EB408854.1|EB408854
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCACCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACCGCCTCAGCAGCTCCTGCEST: gi|149096952|gb|EE182751.2|EE182751
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCEST: gi|211412226|gb|FL112970.1|FL112970
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGC
EST: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTS-ACCAGCACCTAT TGTACCTGTCAGTGCACTGGCTGCAACTGCTACAG
genomic: CCTGTTGTTCCACCTCAAACGTCAGCAGCCCCAGCTGCACCAGCACCTATgtgagcttcg ... tctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAG
tcacttcatgataccattgttattgccagctaactcattgcattctctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTATC
agctaac putative branch site (score: 31)
cattctct putative PPT
attgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttaccttgagtgtaacaatgcttaagttgggtataatttccattcacttcatgataccattgttattgccagctaactcattgcattctctgaattagTGTACCTGTCAGTGCACTGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT