1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcactagtttgtctttgacactgtagtgtagaactgtagacagaatatttcttaagtgcttatactaggataaattgctgacatacaatcttcgctgcagTGTCAGATTTTTAACTGGCCACTCCAGAAATGGTGGGACAGATCCACTATATGTAGCTGGAAATGCGGCTGATCCAGACACTACTTTGGTTGTGTATATG
species | Zea mays |
transcript | GRMZM2G105604_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATT-CAGCAGAGCTAGGCATTCCGTTAACCCATAGAGGTGTTGCTACCAG TGTCAGATTTTTAACNGGCCACTCC
genomic: ATTGCAGCAGAGCTAGGCATTCCGTTAACCCATAGAGGTGTTGCTACCAGgtttgattag ... ttcgctgcagTGTCAGATTTTTAACTGGCCACTCC
tatttcttaagtgcttatactaggataaattgctgacatacaatcttcgctgcagTGTCAGATTTTTAACTGGCCACTCCAGAAATGGTGGGACAGATCCACTATATGTAGCTGGAAATGCGGCTGATCCAGACACTACTTTGGTTGTGTATATG
tgctgac putative branch site (score: 11)
tcttcgct putative PPT
ataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcactagtttgtctttgacactgtagtgtagaactgtagacagaatatttcttaagtgcttatactaggataaattgctgacatacaatcttcgctgcagTGTCAGATTTTTAACTGGCCACTCCAGAAATGGTGGGACAGATCCACTATATGTAGCTGGAAATGCGGCTGATCCAGACACTACTTTGGTTGTGTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
gcactag
- - - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac