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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccaattcgatttttcatcagttttctcatatctaccatcaattttctcaactgtatgtacctttcgacactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGCGAGGTATGTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATG

Basic information

species Zea mays
transcript GRMZM2G104730_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104730_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 3'ss of exon 3
gtccaattcgatttttcatcagttttctcatatctaccatcaattttctcaactgtatgtacctttcgacactg-gcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGCGAGGTATGTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATG
|| ||    |  ||||| ||||| |   | |   ||| |  |  ||   |||   | | || ||    | | |  |||||| ||||| |||||| | ||  | || |||||||| || |||| |||| |||||||||||||    ||||||||| |||||||||| |||||||| ||||
gttcataatg--ttttcctcagtctatgcgt--ttactaaaatcttgaccaaactt-tatatctggaaatattttgcagGTCATGGCCCGTTCTTTACCATTGGATAAGCATACACTCGTGACAAACTTGCGAGGTATGTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATG

upper sequence: GRMZM2G104730_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 3'ss of exon 3
gtccaattcgatttttcatcagttttctcatatctaccatcaattttctcaactgtatgtacctttcgacactg-gcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGCGAGGTATGTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATG
|| ||    |  ||||| ||||| |    || | |||    |  ||   |||   ||  || ||    | | |  |||||||||||| |||||| | ||  | || || ||||| || |||| |||| |||||||||||||    ||||||||| |||||||||| |||||||| ||||
gttcataatg--ttttcctcagtctat--atgtttactcaaatattgaccaaactta-atatctggaaatattttgcagGTTATGGCCCGTTCTTTACCATTGGATAAACATACACTCGTGACAAACTTGCGAGGTATGTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490354|gb|BU050277.1|BU050277
EST:     TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG                         GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: gi|19821825|gb|BQ047849.1|BQ047849
EST:     TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG                         GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: gi|19057956|gb|BM736623.1|BM736623
EST:     TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG                         GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: gi|87152785|gb|DY397574.1|DY397574
EST:     TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG                         GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcatatctaccatcaattttctcaactgtatgtacctttcgacactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGCGAGGTATGTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATG
               atcaatttt  TA-rich tract