Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactacacactaacaatctttttcctgtaatgttctttcttcaatctgtagtgtttcactcgtgtgtattttaacagGAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG

Basic information

species Zea mays
transcript GRMZM2G104377_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104377_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g01060.2 (Oryza sativa), 3'ss of exon 5
gtgactacacactaacaatctttttcctgtaatgttctttcttcaatctgtagtgtttcact-cgtgtgtattttaacagGAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG
||| |||  ||| |  |  ||   | |  |  | ||  | || |  ||    || ||| ||  | | ||| | ||   |||| || |||||||| || |||||||||||  ||||||||||||||||||| ||||| |||
gtggctatgcacaataagactcactacattcttttttctactcctttcccaggtatttgacagcttatgtttcttggtagGAAGCACAAATACTCAACGAGAAACATGTTTTGGAAAAACGCATTGCATACATGCGAATG

upper sequence: GRMZM2G104377_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------------------------------------------gtgactacacactaacaatctttttcctgtaatgttctttcttcaatctgtagtgtttca-ctcgtgtgtatt-ttaacagGAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG
                                                                     | ||    ||       | | || ||   | || ||  ||  || |  | |    ||  || |   | || ||   |||| || |||||||  ||||||||| |||| ||||||||||||||||| ||||||||  ||
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtatttcctggatgaatatatcttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtaatgttctttcttcaatctgtagtgtttcactcgtgtgtattttaacagGAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG
                                          tgtattttaa  TA-rich tract