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...gaacagttttatttttattttttaagtctttacactgaaatttatagcctgggtaaataggtttctgacaaactgactaatacttttatttaaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCAGACATATGGCCCAGAGATATGACAGAACGAGGCAAGAAGCTGAAGCAC
species | Zea mays |
transcript | GRMZM2G104166_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|91056507|gb|EB166925.1|EB166925
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|148970807|gb|EE021570.2|EE021570
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|91873694|gb|EB403651.1|EB403651
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|211195880|gb|FL114998.1|FL114998
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGGTTATGGGTGCACCNTTTAGAGGATGEST: gi|148996413|gb|EE035708.2|EE035708
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGG-TTATGGGTGCACC-TTTAGAGGATG
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|74236878|gb|DT644792.1|DT644792
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|76283090|gb|DV022658.1|DV022658
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|26456480|gb|CA828063.1|CA828063
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|76927135|gb|DV171161.1|DV171161
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|148981761|gb|EE027867.2|EE027867
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCEST: gi|33466753|gb|CF243802.1|CF243802
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCC
EST: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAG GTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTT
genomic: CACAGATGGAAAAGGAGCGTGGCAATATGTTGAAAGCATTTGGCACACAGgtctgtgttc ... taaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTT
agcctgggtaaataggtttctgacaaactgactaatacttttatttaaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCAGACATATGGCCCAGAGATATGACAGAACGAGGCAAGAAGCTGAAGCAC
gactaat putative branch site (score: 2)
cttttattt CT-rich tract
aaactgactaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacagttttatttttattttttaagtctttacactgaaatttatagcctgggtaaataggtttctgacaaactgactaatacttttatttaaattctagGTGGCAGAGCCACTGCGGGCGATGGTTATGGGTGCACCTTTAGAGGATGCCAGACATATGGCCCAGAGATATGACAGAACGAGGCAAGAAGCTGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC