1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attcctacagttatgttggtacacaaaccacctgaatttcaaattgattttccagcaatgaaatttgatcttgtagcctgattgaatgctctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT
species | Zea mays |
transcript | GRMZM2G103033_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG CTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGTEST: gi|37425181|gb|CF650327.1|CF650327
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: AGTGGTTCGACACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACA-- -T-GGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGTEST: gi|211178693|gb|FL329875.1|FL329875
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG ---G-CACTTCAATAATAATCCTCTCAGTGGAGCTTTTCCTCATGAACTGT
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
gattttccagcaatgaaatttgatcttgtagcctgattgaatgctctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT
gcctgat putative branch site (score: 14)
tgctctcc putative PPT
aatgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcctacagttatgttggtacacaaaccacctgaatttcaaattgattttccagcaatgaaatttgatcttgtagcctgattgaatgctctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - -tgttggt
- - - - - - - - - - - - -aaccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc