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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataagccttcccttttcctattcataatgacctcagattgaagcattctacattgcggcatgccttatttgcaaagctatgccggcagcgttgtttgctctgtcgcaattcacctcatgctaagttgtatccgctgcatctttgttggtgttgcagGTACCAGAGCAGCCTAGGTAACAAGAGGATCGAACTATTCGATACTGGTACCGACCAAGTGGCCGACAAATCTCCAGTTCAAATGGCATCAG

Basic information

species Zea mays
transcript GRMZM2G102903_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021822|gb|AW066750.1|AW066750
EST:     ATCAAAGAACTCAACTCCTACGTAACCCTGAGGAAAAC                         GTACCAGAGCAGCCTAGGTAACAAGAGGATCGAACTATTCGATACTGGTAC
genomic: ATCAAAGAACTCAACTCCTACGTAACCCTGAGGAAAACgtaagtataa ... ggtgttgcagGTACCAGAGCAGCCTAGGTAACAAGAGGATCGAACTATTCGATACTGGTAC
EST: gi|22133523|gb|BQ833759.1|BQ833759
EST:     AGAACTCAACTCCTACGTAACCCTGAGGAAAAC                         GTACCAGAGCAGCCTAGGTAACAAGAGGATCAAACTATTCGATACTGGTAC
genomic: AGAACTCAACTCCTACGTAACCCTGAGGAAAACgtaagtataa ... ggtgttgcagGTACCAGAGCAGCCTAGGTAACAAGAGGATCGAACTATTCGATACTGGTAC
EST: gi|211004055|gb|FL319206.1|FL319206
EST:     ATCAAAGAACTCAACTCCTACGTAACCCTGAGGAAAAC                         GTACCAGAGCAGCTTAGGTAACAAGAGGATCGAACTATTCGATACTGGTAC
genomic: ATCAAAGAACTCAACTCCTACGTAACCCTGAGGAAAACgtaagtataa ... ggtgttgcagGTACCAGAGCAGCCTAGGTAACAAGAGGATCGAACTATTCGATACTGGTAC