1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggtgttaggagtaacacctgatctgttgcagtgtctgttattttaagaagcatagttgtcacctgcagtaatgtattgatctttttcttttgtttgaagATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAG
species | Zea mays |
transcript | GRMZM2G102639_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTATGATACCTTCAGTGCATTTGGAGTGATTGTAACTAATCCTAAG ATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCEST: gi|166644213|gb|EG227915.1|EG227915
genomic: TCCTCTATGATACCTTCAGTGCATTTGGAGTGATTGTAACTAATCCTAAGgtgacagttg ... ttgtttgaagATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGC
EST: CTCTATGATACCTTCAGTGCATTTGGAGTGATTGTAACTAATCCTAAG ATAATGCGAGATCCTGAAACAGGAAATTCTAG
genomic: CTCTATGATACCTTCAGTGCATTTGGAGTGATTGTAACTAATCCTAAGgtgacagttg ... ttgtttgaagATAATGCGAGATCCTGAAACAGGAAATTCTAG
aagaagcatagttgtcacctgcagtaatgtattgatctttttcttttgtttgaagATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAG
tattgat putative branch site (score: 86)
tctttttcttttgttt CT-rich tract
tttttcttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgttaggagtaacacctgatctgttgcagtgtctgttattttaagaagcatagttgtcacctgcagtaatgtattgatctttttcttttgtttgaagATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
tggtgtt
- - - - - - - -cacctga
- - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - agaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcag