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gtgagtactgactagagctaagtgtggatgtactgtgggttttctattcattgggttatatatgcttttgtggagcttaccttgtttcgtttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGGACCCGAGTTTGGTGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTG
species | Zea mays |
transcript | GRMZM2G102475_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|148955907|gb|EC901617.2|EC901617
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|148953283|gb|EE152769.2|EE152769
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|149026687|gb|EE046096.2|EE046096
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|93013768|gb|EB639288.1|EB639288
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|149045935|gb|EE047933.2|EE047933
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
genomic: ACACTGGCGGGTTCAGAAGGGACGGGAGCCTGTGGATGCAGAGGAGGGTGgtgagtactg ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
attcattgggttatatatgcttttgtggagcttaccttgtttcgtttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGGACCCGAGTTTGGTGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTG
agcttac putative branch site (score: 3)
tttcgttt putative PPT
ttatatatgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactgactagagctaagtgtggatgtactgtgggttttctattcattgggttatatatgcttttgtggagcttaccttgtttcgtttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGGACCCGAGTTTGGTGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT