1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtcttctggcaatgcccagctaacttttgtacttttgttctttctgatgaatcatgatccgacactgtaaatatctattctgccacctcatgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGACATGATTACAAAGTCTTCTATCATGCTTGGTCTTGGAGAGACTGATGAA
species | Zea mays |
transcript | GRMZM2G101698_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGAAGGAEST: gi|211317505|gb|FK953025.1|FK953025
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
EST: ATTGAAACCGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGAEST: gi|211319523|gb|FK953030.1|FK953030
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
EST: ATTGAAACCGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGAEST: gi|67023528|gb|CO452277.1|CO452277
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
EST: ATTGAAACCGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGAEST: gi|211319532|gb|FK953032.1|FK953032
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
EST: ATTGAAACCGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGAEST: gi|71324730|gb|DR799071.1|DR799071
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
EST: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGG GTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
genomic: ATTGAAACTGTGAGGAGTCTACAGAGGGTTGTGAGGGATCCCCGGGCAGGgtaatgtgct ... atgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGA
tgatgaatcatgatccgacactgtaaatatctattctgccacctcatgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGACATGATTACAAAGTCTTCTATCATGCTTGGTCTTGGAGAGACTGATGAA
ttctgat putative branch site (score: 3)
tgtaaatatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcttctggcaatgcccagctaacttttgtacttttgttctttctgatgaatcatgatccgacactgtaaatatctattctgccacctcatgtttacagGTATGATCAGAGCTTAGCAGTTCTCAAGCATGCAAAAGGTTCCAGGGAGGACATGATTACAAAGTCTTCTATCATGCTTGGTCTTGGAGAGACTGATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA