1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaattgagaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAAGGATGTAACTATTGTCAAAAGGATCCCTTATGAAGTAATGTTGTCAATG
species | Zea mays |
transcript | GRMZM2G101181_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG TGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAAEST: gi|76282456|gb|DV022024.1|DV022024
genomic: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgag ... tcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
EST: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG TGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
genomic: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgag ... tcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
acgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAAGGATGTAACTATTGTCAAAAGGATCCCTTATGAAGTAATGTTGTCAATG
gcttgac putative branch site (score: 4)
ttcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattgagaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAAGGATGTAACTATTGTCAAAAGGATCCCTTATGAAGTAATGTTGTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG