1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatataaatatatatatcacacaacagcactccgccgtatcatgcgtgttagttgcagctttctgatcctgtcgtgattctgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAAGATGGCGAGGATGGTTGAGGAAGCACAGAACAGTAGGTCCCGAACTCA
species | Zea mays |
transcript | GRMZM2G099191_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAEST: gi|149070628|gb|EE159039.2|EE159039
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAEST: gi|148934258|gb|EC878280.2|EC878280
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAEST: gi|148934257|gb|EC878279.2|EC878279
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAEST: gi|149079488|gb|EE168465.2|EE168465
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAEST: gi|149103749|gb|EE289155.2|EE289155
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
EST: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATG GCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
genomic: CGCCAAGCAGCCGGAGTCCCAGGTCTGGGCCGGCACGCTCAACATCGATGgtatataaat ... tgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTA
cgtatcatgcgtgttagttgcagctttctgatcctgtcgtgattctgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAAGATGGCGAGGATGGTTGAGGAAGCACAGAACAGTAGGTCCCGAACTCA
ttctgat putative branch site (score: 102)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataaatatatatatcacacaacagcactccgccgtatcatgcgtgttagttgcagctttctgatcctgtcgtgattctgtgtggcagGCTACATCGCTGTCAGGACAACTGCCATGGCGGACAACTCTGCCGTCGCTAAGATGGCGAGGATGGTTGAGGAAGCACAGAACAGTAGGTCCCGAACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG