1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactgatatgcggcgattctatgggttttccacttggcttgtcttgcttctgttgttgtcgtcgtataacctgctgctagtgttgtttttgttccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCTTGAAGAAGAAATTCTCACAGAGAAAG
species | Zea mays |
transcript | GRMZM2G099074_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|86466034|gb|DY232407.1|DY232407
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|78086939|gb|DV515332.1|DV515332
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|71447635|gb|DR828685.1|DR828685
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATEST: gi|88750837|gb|DY534978.1|DY534978
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGAT
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|71315827|gb|DR794576.1|DR794576
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|78122530|gb|DV540914.1|DV540914
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCEST: gi|78124860|gb|DV543244.1|DV543244
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
EST: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAG GCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
genomic: GTGGTAACGATATCCCGTCTTGTGTTGTCTGCAACGAAGCTTGTATAAAGgtactgatat ... tccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGC
ttctgttgttgtcgtcgtataacctgctgctagtgttgtttttgttccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCTTGAAGAAGAAATTCTCACAGAGAAAG
gtataac putative branch site (score: 9)
tttttgttcc putative PPT
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatatgcggcgattctatgggttttccacttggcttgtcttgcttctgttgttgtcgtcgtataacctgctgctagtgttgtttttgttccacaacagGCATCGAGTTGTCCGAACGAGGGATGCGATGTTAGAATTCACGAGTACTGCTTGAAGAAGAAATTCTCACAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA