1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttaaatgattattcagaccaatcctacattagaatttctttgcttaaggattttgattttcttttatgtttgccaacatcgatatctttctgcatccagGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAAGAAGGGATATCTGTCATAAAGCCTTCAGGTATTATGGTATTCAACATGG
species | Zea mays |
transcript | GRMZM2G098039_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGCCTTGAGTAACTACTGTGCTCTTCAG GGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAAEST: gi|32846005|gb|CD985686.1|CD985686
genomic: ACGCCTTGAGTAACTACTGTGCTCTTCAGgttagttgta ... ctgcatccagGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAA
EST: ACGCCTTGAGTAACTACTGTGCTCTTCAG GGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAA
genomic: ACGCCTTGAGTAACTACTGTGCTCTTCAGgttagttgta ... ctgcatccagGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAA
taaggattttgattttcttttatgtttgccaacatcgatatctttctgcatccagGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAAGAAGGGATATCTGTCATAAAGCCTTCAGGTATTATGGTATTCAACATGG
ttttgat putative branch site (score: 148)
tatctttct putative PPT
attttgattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaatgattattcagaccaatcctacattagaatttctttgcttaaggattttgattttcttttatgtttgccaacatcgatatctttctgcatccagGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTGCTCGTGCGGTGGAAGAAGGGATATCTGTCATAAAGCCTTCAGGTATTATGGTATTCAACATGG
- - - - - - - - - - - -cctacat
- - - - - - - - - - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc