1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaggcatacaataggcatgttttctaaaatagtagatagatgagtatattcactctgataatagttgctttgtgagatatcttttttccatatgcttcagTGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGC
species | Zea mays |
transcript | GRMZM2G098011_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAG TGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGT
genomic: TTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacat ... tatgcttcagTGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGT
atattcactctgataatagttgctttgtgagatatcttttttccatatgcttcagTGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGC
ctctgat putative branch site (score: 4)
tatcttttttccat putative PPT
atatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggcatacaataggcatgttttctaaaatagtagatagatgagtatattcactctgataatagttgctttgtgagatatcttttttccatatgcttcagTGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- -gcataca
- - - - - - aggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttg