1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctaaaatagtagatagatgagtatattcactctgataatagttgctttgtgagatatcttttttccatatgcttcagtggacatctgcttattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
species | Zea mays |
transcript | GRMZM2G098011_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAATATCTTGCGAAGGATCTTGGGATTGCTGAAAATGCCGTCTTACAGG GATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGEST: gi|13198611|gb|BG354413.1|BG354413
genomic: TGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGGgtatgacata ... tattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCG
EST: AATGCCGTCTTACAGG GATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGEST: gi|211244564|gb|FL131413.1|FL131413
genomic: AATGCCGTCTTACAGGgtatgacata ... tattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCG
EST: TGAATATCTTGCGAAGGATCTTGGGATTGCTGAAAATGCCGTCTTACAGG GATGGGTGGTTAGCACATCCCTAGCTGGTGCAGCACTAGGTTCCTTTACCG
genomic: TGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGGgtatgacata ... tattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCG
ctttgtgagatatcttttttccatatgcttcagtggacatctgcttattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
tctgctt CT-rich tract
atatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaaatagtagatagatgagtatattcactctgataatagttgctttgtgagatatcttttttccatatgcttcagtggacatctgcttattgctcagGATGGGTGGTTAGCACATCCCTAGCTGGTGCAACACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgc