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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaaaagttataaggattaatgtgtctgcttttatctgtcggtaatgtaaaactgaaatcttaaatcctaccatttttgtaatattcatcggtgtcctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACGCCTATCACAGAG

Basic information

species Zea mays
transcript GRMZM2G097226_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097226_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 3'ss of exon 4
gtttgtaaaagttataaggattaatgtgtctgcttttatctgtcggtaatgtaaaactgaaatcttaaatcctaccatt-tttgtaatattcatcggtgtcctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACGCCTATCACAGAG
|| ||| ||  | | ||  |||| |   | ||| |||            ||||||  |      |||  || || | || ||  | |  |      || | |||||||||||||| |||||||||||||| | |||||||||||| |||||||| || || || |||||||||
gtgtgtgaagttaaaaaatattagtagttgtgcctttcctcaggtccgctgtaaacgta-----ttagctcttatcgttgttcatgaagt------gtattctgttgcagATTTCAAAGGGCTTGCTTGACAAGTATGGTCCTGAGAGGGTTCTGGATACACCAATCACAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78122124|gb|DV540508.1|DV540508
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|211069303|gb|FL193602.1|FL193602
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|32940983|gb|CF045802.1|CF045802
EST:     TACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: TACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|32799904|gb|CD952140.1|CD952140
EST:     GTTGGAGAGTACCAAGGCGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|91057168|gb|EB167586.1|EB167586
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgaaatcttaaatcctaccatttttgtaatattcatcggtgtcctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACGCCTATCACAGAG
                                            tcctgtt  CT-rich tract
                      atttttgtaatattca  TA-rich tract