1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacacattttatttttttcatggtgataattaattcgtagcttgcgcaaaaccaaaggttgtgtgatttttcaaggcagaaatcagtatcatgataggtgtgcttgagcttttgatagctagtttatttgaacttttatctttttatgatcatggtatattgagacagaaatattttacatgtacctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCATATGGGGCTTGTTTCACGCCACTTGAAGGAAGGAGGGAATGATGGTGT
species | Zea mays |
transcript | GRMZM2G096647_T08 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|76927628|gb|DV171311.1|DV171311
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTATTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTTTCCEST: gi|76020732|gb|DT947902.1|DT947902
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|50331285|gb|CO526411.1|CO526411
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|50338073|gb|CO533199.1|CO533199
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|50338074|gb|CO533200.1|CO533200
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|60358154|gb|DN225127.1|DN225127
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCEST: gi|71445259|gb|DR826309.1|DR826309
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
EST: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTG TTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
genomic: CAAGTACATGTTAGTGGACGTCACCTGCCAAAGATACACAGTTTCTACTGgtacacattt ... acctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCC
tctttttatgatcatggtatattgagacagaaatattttacatgtacctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCATATGGGGCTTGTTTCACGCCACTTGAAGGAAGGAGGGAATGATGGTGT
taccttt CT-rich tract
aaatattttacatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacattttatttttttcatggtgataattaattcgtagcttgcgcaaaaccaaaggttgtgtgatttttcaaggcagaaatcagtatcatgataggtgtgcttgagcttttgatagctagtttatttgaacttttatctttttatgatcatggtatattgagacagaaatattttacatgtacctttgcagTTTTTCAGTTGGAGAAAATATTTAAGACAACATTTTCATCGTTTGTTCTCCATATGGGGCTTGTTTCACGCCACTTGAAGGAAGGAGGGAATGATGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG