1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaacttagcaaattctagttactctaccagtgagcacaataggcatcaacggtattgggacgacatggcagaataaagtatgatgtattggatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTCCAGCGATCATTGCGGCCAGGGACCGCAAAGAACTGGCGAAGGTGGCCT
species | Zea mays |
transcript | GRMZM2G095782_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTCGAGGTTGAAGGCACCNGGTTTTCTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCA-GTCGGAA-GGA-GCACTTCEST: gi|32934821|gb|CF039633.1|CF039633
genomic: GCTCGAGGTTGAAGGCACC-GGTTTTCTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTC
EST: GTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTEST: gi|78091689|gb|DV520063.1|DV520063
genomic: GTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTEST: gi|101390144|gb|EB817004.1|EB817004
genomic: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATG GTTGCTTTGTTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTEST: gi|166612383|gb|EG320172.1|EG320172
genomic: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: CTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTTCTGATATCGTTEST: gi|71317498|gb|DR795465.1|DR795465
genomic: CTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTEST: gi|166568962|gb|EG178995.1|EG178995
genomic: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: CTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTTCTGATATCGTTEST: gi|76013635|gb|DT940805.1|DT940805
genomic: CTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
EST: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATG GTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
genomic: AGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAGTGAGGAACATGgtaagtttaa ... gatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTT
tcaacggtattgggacgacatggcagaataaagtatgatgtattggatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTCCAGCGATCATTGCGGCCAGGGACCGCAAAGAACTGGCGAAGGTGGCCT
aataaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacttagcaaattctagttactctaccagtgagcacaataggcatcaacggtattgggacgacatggcagaataaagtatgatgtattggatgacgcagGTTGCTTTGCTGCTTCAAGTCGGAAAGGAAGCACTTCCTCCTGATATCGTTCCAGCGATCATTGCGGCCAGGGACCGCAAAGAACTGGCGAAGGTGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC