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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctcgctacaattagtcctctctcgctctcaccgatactgcagaatggagtagcttattctgagcatctgttatgctcatgacagatcggtgtttgattcctgtgtgttttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGCTCAACCATCCGTGGACTCCCTCTAGTTGCACAAACCACCTCAGTGCTCT

Basic information

species Zea mays
transcript GRMZM2G095727_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028242|gb|CO456991.1|CO456991
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|31664321|gb|CD573046.1|CD573046
EST:     GAATAATTTCTTCCAGCCCGGCGAC-A                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|78086698|gb|DV515091.1|DV515091
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|31441071|gb|CD510502.1|CD510502
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|89252032|gb|DY623818.1|DY623818
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|94478976|gb|EB707934.1|EB707934
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|71432179|gb|DR813229.1|DR813229
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
EST: gi|211378749|gb|FL130659.1|FL130659
EST:     GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAA                         ATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC
genomic: GCGTCGCGGAGCACATGGCTTAAGAATAATTTCTTCCAGCCCGGCGACAAgtgagcctcg ... ttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctgttatgctcatgacagatcggtgtttgattcctgtgtgttttccctgcagATTCGCAGTTGGATTCAGCATATGCATTTTTTATGCTGACATAGGATGTGCTCAACCATCCGTGGACTCCCTCTAGTTGCACAAACCACCTCAGTGCTCT
                           gtttgat  putative branch site (score: 5)
 tgttttccct  putative PPT
 tttgatt  TA-rich tract