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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT

Basic information

species Zea mays
transcript GRMZM2G095593_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g49150.1 (Oryza sativa), 3'ss of exon 4
---tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgt-ttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
      || ||| | ||  |    |  |||||    | || |     | | |  || | |   | |  |   || | |  || |  ||||||  |    | |||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||         | |  ||  
tttataatgtgc-tcgctcattgattatgtctggaagaaacaatttgcatggtcctcact---tccacattcttaccgtggtgtgctgttttatgatttcacagGTGACACATGCTGACTTCAAGAAGGCAAAGGAGAAGGTGATGTTCAAGAAGAAGGAAGGTGTGCCGGAGGGTCTTTACATGTGATGTGCTCACTGGTCGC

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 5
tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttggg----tacacc-cagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT--
    |   | ||   |   |      | |  |||||     |    ||  |    |||   ||    ||   |  |||||||| ||||       | | |  |||||||| ||||| || ||||||||||||||||| ||||| ||||  |||||||| ||||| || || || || || || ||||    |   | ||||||||  
-aagtgatcctattttgttttctacctttttttggaggggtgtgtgtcttttcctttactctc----atgaccaaatgttttttttttaaaatcttgctcttcagGTGACGCATGCCGACTTCAAGAAGGCAAAGGATAAGGTTATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTGA--AGCATCTTCATCATTT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 5
---------tccatttgcatagcataactgtct-tgtctacttgga-atatagcacttcgatc-tgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT-
            |      |||   ||     |      ||    | | | | ||||| |    | | |||   ||||     ||| |||| |||   |||| |     |||||||| ||| | ||||||||||| |||||||||||||| |||| ||||||||| ||||| || || || || |||||||||||   | | || ||||    
gtagagactcttaaccatttagttcaagcacatacaaacacacacacacacaccacttgggcaattactagccactga----cgctaatgtgtttaaattggatttgttcagGTGACACATCCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAAGGCCTCTACATGTAAA-ATTATAATCATATCG

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 3'ss of exon 5
tccatttgcatagcataactgtcttgtc--tacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT-
       | |  |  |  ||| ||| ||   |||||    || | ||  | ||||    |   | | |  ||  |   |||||  || ||   |      ||||||| ||||  || ||||||||||| ||||||||||| |||| ||||||||| ||||| ||||| || ||||| |||||||     ||  |   |  |  
-------gtaaggattctctggcttctcaccacttgattcatcgaacg-caatctttgaataattttactttaacctttgtttg-gtcttctattggtttagGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGAGTTCCTGAAGGTCTTTACATGTGAATGATGCACA-ACGACT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 5
-------tccatttgcatagcataactgtcttgtctacttggaatatag-cacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
             |||||  | | |||  | ||| | ||  || | ||| ||| | |    ||  ||| ||  |  |    |    |  ||   |   || |   |||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||| ||||| || || || || || |||||||    |  ||  |    ||
ggaagaagttgaatgcattacctgacta-catgtttgct--gattttagtcacctag----gaccaggatcccaattaaatttgactggttaaatactgtgc-ttcagGTGACTCATGTAGACTTCAAGAAGGCAAAGGAGAAGGTGATGTTCAAGAAGAAAGAAGGGGTGCCAGAAGGACTTTACATGTGAAAACACTGCTACATAT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S109_234V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------------tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattag----gttctgagatttgctg-atgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                                                                           | ||   ||    | ||     || |   | ||  ||   | || ||| |  | ||    ||| ||  |||   || || || |||  |   |  |   |||||||| || |  |||||||||||||| || ||||| |||||||| ||||||||||| || || || || ||| | |||||||||   ||  | |     |
gtgagactgttcgtattttgcatttcatgaatatgggcttcttgactagttgaaatcaggtgccagttatgcagtactttattattgcaccttcaaggttttagttgataatgtgattttgattttttcagcacggttgtgcaattaaatggatcttattggatgttggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGAAGGAGGGCGTGCCTGAGGGTTTGTACATGTAGAGTATTCAGTACAGGT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------tccatttgcatagcataactgtcttgtctacttggaat--atagcacttcgatctgattag--gttctgagatttgctgatg-----tttttgttttgggta-----cacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                        | || ||    |    |      ||| | |  || |||  |||  | ||   | |||| |   |  |||   | |  | |||     || ||||||||| |      |   |||||||| || |  |||||||||||||| || |||||||| ||||| ||||||||||||||||| || || ||  | |||||||||   ||  | |     |
gtaagattgtcgtcttttgtactttgcagttcgtgaatggaggctaattgaccagctgaaatgaataaaagttgcttttgatcaaaagacctggtttcttgtaatgagttgttattgttttggatggtgatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGAAGGAAGGTGTACCTGAGGGATTATACATGTAGATTATTCAGTGCAGGT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------------------tccatttgcatagcataactgtc--ttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacc-cagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                                                            | || ||   |||     ||      ||| || ||| |   |   | || |   || || | ||||| || |   |  ||  | ||  ||    |  || |||||||| || || || ||||||||||| ||||| || |||||||||||||||||||||||||| || || ||  | || ||||||   |   | |||    
gtgagcttgccatttctttgtattcttttatatgtatttttaatgcgtctcgtcagaggttacacttttttagttgccctcatggctgtataattgcaggctttgaatt-ggcttgttttgattctgtgactaagtattgactgtggattcttaatgccacagGTGACTCAAGCGGACTTCAAGAAGGCTAAGGACAAAGTGATGTACAAGAAGAAGGAAGGTGTACCCGAGGGGTTATATATGTAGAATACTCAGTCAAGTG

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ20767 (Selaginella moellendorffii), 3'ss of exon 5
tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                                       |||    |||||    ||     ||    | |   ||| || || || |        |||||| || || || |||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| || || ||||||||   |  |    || | |
--------------------------------------gtagtttctcgatgcttttcacaactttcttgtaacgattttcttcttct--------ccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGAAAGAAGGCGTCCCGGAGGGCCTGTACATGTAAATAGCCGTCCCAGCTT

upper sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ32659 (Selaginella moellendorffii), 3'ss of exon 5
tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                                       |||    || ||    ||     ||    | |   ||| || || || |        |||||| || || || |||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| || || ||||||||   |  |    || | |
--------------------------------------gtagtttctcaatgcttttcacaactttcttgtaacgattttcttcttct--------ccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGAAAGAAGGCGTCCCGGAGGGCCTGTACATGTAAATAGCCATCCCAGCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023011|gb|DV491398.1|DV491398
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|20300162|gb|BQ163105.1|BQ163105
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGC
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: gi|6095605|gb|AW120272.1|AW120272
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|18963161|gb|BM660274.1|BM660274
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGC
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: gi|32935651|gb|CF040463.1|CF040463
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGT
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGT
EST: gi|5296251|gb|AI782931.1|AI782931
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAG
EST: gi|33095909|gb|CF055903.1|CF055903
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGGCCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|213170809|gb|FM191861.1|FM191861
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|71446953|gb|DR828003.1|DR828003
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|113704000|gb|EE681504.1|EE681504
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGATAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|5762107|gb|AI967155.1|AI967155
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|20507124|gb|BQ279496.1|BQ279496
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|32906982|gb|CF011795.1|CF011795
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTATTATAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|116824999|gb|EC868683.1|EC868683
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCACAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|22714021|gb|BU197442.1|BU197442
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|5762170|gb|AI967218.1|AI967218
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|149008286|gb|EE040435.2|EE040435
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|32930331|gb|CF035143.1|CF035143
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|211247443|gb|FL282637.1|FL282637
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|8318691|gb|BE025256.1|BE025256
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|213174434|gb|FM191853.1|FM191853
EST:     GCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: GCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|21987744|gb|BQ779272.1|BQ779272
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|8576996|gb|BE129633.1|BE129633
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAG
EST: gi|5650403|gb|AI920763.1|AI920763
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|213169731|gb|FM183251.1|FM183251
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGNTNTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|18661880|gb|BM501630.1|BM501630
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGC
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: gi|5847225|gb|AW000304.1|AW000304
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|213180007|gb|FM195909.1|FM195909
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|5901265|gb|AW042365.1|AW042365
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|211247444|gb|FL282638.1|FL282638
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|20513035|gb|BQ280221.1|BQ280221
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|32936539|gb|CF041358.1|CF041358
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAAGTGATGTTCAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|18654858|gb|BM499663.1|BM499663
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGC
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: gi|32912987|gb|CF017799.1|CF017799
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|5325130|gb|AI783321.1|AI783321
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|211247440|gb|FL282634.1|FL282634
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|56382674|gb|CV985343.1|CV985343
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|5846790|gb|AI999873.1|AI999873
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|211247441|gb|FL282635.1|FL282635
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTTGACCCATGCAGATTTCAAGAAGGCCAAGGAGAAGGTGATGTTCAAGAA
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGT-GACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAA
EST: gi|22472561|gb|BU037041.1|BU037041
EST:     CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: gi|113567205|gb|DW740920.1|DW740920
EST:     CACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG                         GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 414

GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 380

GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 322

GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 424

GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT
                         tgctgat  putative branch site (score: 424)
                                 tttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccatttgcatagcataactgtcttgtctacttggaatatagcacttcgatctgattaggttctgagatttgctgatgtttttgttttgggtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGAAGGAAGGTGTTCCGGATGGTCTCTACATGTAGCCAATCTATTCATCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- catttgc
- - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - -gcacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg