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...tttatgttactgcacatgaggtgtgtaggtggctgtatttctcttaatcaaaaagttatttaccatccgtaaagtaatagattctgatctattttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTGATGATGCAGTTCAAAAAACCAAAAAGTAAATGCAATGCAGCTGCAGCTA
species | Zea mays |
transcript | GRMZM2G095323_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATTGATCAGCATTTTGAAAATCGCCCCAAGAATCTTGTGGATAAT AGTGAAGGAAGATGEST: gi|78125182|gb|DV543566.1|DV543566
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATG
EST: AGTTCATTGATCAGCATTTTGAATATCGCCACAAGAATCTTGTGGATAAT AGTGAAGGAAGATGCGTGGCAGATCTATGCGGCGCACTACATTGTGATCTGEST: gi|78115630|gb|DV534018.1|DV534018
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
EST: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAAT AGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTGEST: gi|88755486|gb|DY539627.1|DY539627
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
EST: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAAT AGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
aatcaaaaagttatttaccatccgtaaagtaatagattctgatctattttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTGATGATGCAGTTCAAAAAACCAAAAAGTAAATGCAATGCAGCTGCAGCTA
ttctgat putative branch site (score: 3)
tctattttctt CT-rich tract
taaagtaatagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatgttactgcacatgaggtgtgtaggtggctgtatttctcttaatcaaaaagttatttaccatccgtaaagtaatagattctgatctattttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTGATGATGCAGTTCAAAAAACCAAAAAGTAAATGCAATGCAGCTGCAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - tgttact
- - - - - - cacatga
- - - - - - - - - - - - - - - -gctgtat
- - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg