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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccccaacttgcttagggctaaaaggctttattgttatcattattcaatagaaacctagatacttttgatgttccgcgtcagtttaatagctttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG

Basic information

species Zea mays
transcript GRMZM2G095239_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211130407|gb|FL313028.1|FL313028
EST:     TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG                         GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
EST: gi|74244193|gb|DT652107.1|DT652107
EST:     TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG                         GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
EST: gi|60359172|gb|DN226145.1|DN226145
EST:     TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG                         GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagaaacctagatacttttgatgttccgcgtcagtttaatagctttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG
                                   gtttaat  putative branch site (score: 4)
                                            ctttcctgc  putative PPT
                                  agtttaata  TA-rich tract