1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccccaacttgcttagggctaaaaggctttattgttatcattattcaatagaaacctagatacttttgatgttccgcgtcagtttaatagctttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG
species | Zea mays |
transcript | GRMZM2G095239_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGEST: gi|74244193|gb|DT652107.1|DT652107
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
EST: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGEST: gi|60359172|gb|DN226145.1|DN226145
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
EST: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAG GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
genomic: TCATTGCCTAGTGAAGCAAAGAACACATCAAGTTCGAAGAAATCTCACAGgtatttattt ... tttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGG
aatagaaacctagatacttttgatgttccgcgtcagtttaatagctttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG
gtttaat putative branch site (score: 93)
ctttcctgc putative PPT
agtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccaacttgcttagggctaaaaggctttattgttatcattattcaatagaaacctagatacttttgatgttccgcgtcagtttaatagctttcctgcagGCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG
- - - cttgctt
- - - - - - - - - - - - - - - - - - - - - - -aatagaaa