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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacgtgcatgtagcctactaccatagtgccatggctcttccatggaaaaaaaaggtcatcaagttcttatctagcacagtacgtttggcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA

Basic information

species Zea mays
transcript GRMZM2G095141_T05
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148951196|gb|EC896884.2|EC896884
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|78075611|gb|DV504045.1|DV504045
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|71447021|gb|DR828071.1|DR828071
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|76016005|gb|DT943175.1|DT943175
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|149100624|gb|EE186712.2|EE186712
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|71301051|gb|DR786555.1|DR786555
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|148951347|gb|EC897061.2|EC897061
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|91872713|gb|EB402670.1|EB402670
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
EST: gi|149076596|gb|EE165231.2|EE165231
EST:     TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAG                         CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG
genomic: TGTCGGTTGTCGAGGCCACCAGCTTCGTCTCCCCAAAGTGGGTGCCGCAGgtgacgtgca ... gcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaaaaaaaggtcatcaagttcttatctagcacagtacgtttggcaactgcagCTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA
     aaaaaa  TA-rich tract