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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttaaatgtcaatgcagtcttactatattttttgtttcacagcacataaacataagttatttccgtcgtgtagTGAACAAGGGAGAATATTGTGAACTGAAGGTCATGTATCAGCGAAAAGCAGGCTTTCCTCTTGTAGCAATTGTGCACTGAAAAACTACAGTGCCCTTATG

Basic information

species Zea mays
transcript GRMZM2G094083_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352224|gb|CD436581.1|CD436581
EST:     TTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATG                         TGAACAAGGGAGAATATTGTGAACTGAAGGTCATGTATCAGCGAAAAGCAG
genomic: TTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATGgtaagtgtta ... cgtcgtgtagTGAACAAGGGAGAATATTGTGAACTGAAGGTCATGTATCAGCGAAAAGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttactatattttttgtttcacagcacataaacataagttatttccgtcgtgtagTGAACAAGGGAGAATATTGTGAACTGAAGGTCATGTATCAGCGAAAAGCAGGCTTTCCTCTTGTAGCAATTGTGCACTGAAAAACTACAGTGCCCTTATG
 gtcttac  putative branch site (score: 3)
                                      ttatttcc  putative PPT
                           ataaacataagttatt  TA-rich tract