1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgttcactgatgtctgtttttacaattgcattgctgctattataattttgtctgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTACGCAGGGTTGAGCCATATGTTGCATATGGGTAAGTTTTCTAGCTGATTT
species | Zea mays |
transcript | GRMZM2G094051_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAAEST: gi|211197410|gb|FL309893.1|FL309893
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACEST: gi|211467480|gb|FL327940.1|FL327940
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGAC
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCEST: gi|211430944|gb|FL367566.1|FL367566
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTC
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACWATTAACATGCTAEST: gi|211331288|gb|FL346026.1|FL346026
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|76281808|gb|DV021376.1|DV021376
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211467080|gb|FL315617.1|FL315617
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAEST: gi|211425293|gb|FL350052.1|FL350052
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211419805|gb|FL340213.1|FL340213
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211489662|gb|FL352063.1|FL352063
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTEST: gi|31558661|gb|CD527873.1|CD527873
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATT
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGNGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211262500|gb|FL327821.1|FL327821
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211430817|gb|FL361882.1|FL361882
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGKGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211489013|gb|FL325724.1|FL325724
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTAEST: gi|211427800|gb|FL348316.1|FL348316
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
EST: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
genomic: CCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcac ... tttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
ctgctattataattttgtctgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTACGCAGGGTTGAGCCATATGTTGCATATGGGTAAGTTTTCTAGCTGATTT
gtctgat putative branch site (score: 4)
tttatttt putative PPT
aacatttgtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttcactgatgtctgtttttacaattgcattgctgctattataattttgtctgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTACGCAGGGTTGAGCCATATGTTGCATATGGGTAAGTTTTCTAGCTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT