Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtattttgattttcttttatgcaaaaacttcgtttgtttcaacaagtgaactccttgttttttatagctagctgaacattcttttctgtggctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG

Basic information

species Zea mays
transcript GRMZM2G093858_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093858_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 3'ss of exon 3
----gcatgtattttgattttcttttatgcaaaaacttcgtttgtttcaacaagtgaactc----cttgttttttatagctagctgaacattcttttctgtggctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG
     ||| ||| |  || |  |   |||| | |  |||  |||    |||  |||  |||     || |||||| | |||  || || || ||||| | ||| |     ||| ||| ||| ||| |  ||   |||||| ||||| |||| ||| ||||||||||| ||||||||  |||||||||| || || |||
gtattcat-tatctccatatgatagcatgctatactttc--ttgaaagaacctgtgccctcagttttttttttttttggctttcttaatatcctttt-tatggttt----agGTGAAAACATTGCACATCTCCGGTGGGATTTGAGGGTAAACATAGCTCTGGATGTTGCTCGGGGCTTGGAGTACCTACATGATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928132|gb|EC872655.2|EC872655
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|149073410|gb|EE161714.2|EE161714
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|148930222|gb|EC872656.2|EC872656
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|148997914|gb|EE035902.2|EE035902
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaactccttgttttttatagctagctgaacattcttttctgtggctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG
         ttgttttttata  TA-rich tract