1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaggtgactgggtgcagatattggctagctctgtttgtttggttggccttttgttttaactacttccttatttatacgcacattttcttaatcatacagGTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCAAACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCA
species | Zea mays |
transcript | GRMZM2G093391_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCACTCTGAAAGAACAAGAGAGTGCACGAAAAATTCCAAATGATCAGTT GTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCAEST: gi|56382640|gb|CV985309.1|CV985309
genomic: AGCACTCTGAAAGAACAAGAGAGTGCACGAAAAATTCCAAATGATCAGTTgtaagtcctc ... aatcatacagGTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCA
EST: AGCACTCTGAAAGAACAAGAGAGTGCACGAAAAATTCCAAATGATCAGTT GTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACCAGCTCA
genomic: AGCACTCTGAAAGAACAAGAGAGTGCACGAAAAATTCCAAATGATCAGTTgtaagtcctc ... aatcatacagGTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCA
ggccttttgttttaactacttccttatttatacgcacattttcttaatcatacagGTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCAAACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCA
ttttctta CT-rich tract
attttcttaatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaggtgactgggtgcagatattggctagctctgtttgtttggttggccttttgttttaactacttccttatttatacgcacattttcttaatcatacagGTCCAAGGTGGCCACCCGAGTTCAGAAGACAACAGTACCCAAACTAGCTCAAACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - -ggtgcag
- - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacatt