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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctttgctgcatgtcactatttactctacttttgttttcaatcacttcattgatgggacctactgtaactaacttagagtgtacaatttgttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149090120|gb|EE179418.2|EE179418
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516878|gb|FK974814.1|FK974814
EST:     ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCAAAATTG                         GTTTTATCTTCCA-TAGGATACAATGGACGA
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAA-TTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGA
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211514522|gb|FK974800.1|FK974800
EST:     CTGCGGATTCAATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAAATTG                         GTTTTATCTTCCAATAGGA
genomic: CTGCGGATTCA-TCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGA
EST: gi|211153843|gb|FK974844.1|FK974844
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGT
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGT
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|29168004|gb|CB411264.1|CB411264
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATA
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATA
EST: gi|211153845|gb|FK974846.1|FK974846
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG
EST: gi|12046552|gb|BF728691.1|BF728691
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|149104775|gb|EE290237.2|EE290237
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCNATAGGATACAATGGACGAGCATCATCTATAG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAG
EST: gi|78180016|gb|DV550389.1|DV550389
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|86466218|gb|DY232591.1|DY232591
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGAACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|6973663|gb|AW438237.1|AW438237
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211514526|gb|FK974804.1|FK974804
EST:     ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCCAAATTG                         GTTTTATCTTCCAATAGGATAC
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATAC
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516883|gb|FK974819.1|FK974819
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTTATCCAAATTG                         GTTTTATCTTCCAATAGGGATACA-TGGACGAGCATCATCTATAGTTGTGT
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG-ATACAATGGACGAGCATCATCTATAGTTGTGT
EST: gi|93015898|gb|EB641418.1|EB641418
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATTGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211512177|gb|FK974795.1|FK974795
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAATTG                         GGTTTTATCTTCCA
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagG-TTTTATCTTCCA
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|148983250|gb|EE029217.2|EE029217
EST:     ACTGCGGATTCATCTTTCC-AGGGCCGCAGACTCCAGTTAATCCCAATTG                         GTTTTATCTTCC
genomic: ACTGCGGATTCATCTT-CCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCC
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516880|gb|FK974816.1|FK974816
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcattgatgggacctactgtaactaacttagagtgtacaatttgttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG
                      aactaac  putative branch site (score: 1)
                                          tttgttc  putative PPT
                                     tacaattt  TA-rich tract