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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattcttttccaaagtgtgaatgtgaaaatatagtgtcctttcctattacactgaattgaactttctgactaccttgtgtactttgcagATTGTTGCTGGCATTTACTTCTCTAACTGGTTGGGTTCTACAGATATTTCAACACCATATAGCAT

Basic information

species Zea mays
transcript GRMZM2G093278_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093278_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g11260.1 (Oryza sativa), 3'ss of exon 4
gtgagttattcttttccaaagtgtgaatgtgaaaatatagtgtcctttcctattacactgaat-tgaactttc-tgactaccttgtgtac-------------tttgcagATTGTTGCTGGCATTTACTTCTCTAACTGGTTGGGTTCTACAGATATTTCAACACCATATAGCAT
|||| |  | ||||| |||       |||  |  ||    |  ||||   | ||  || | |  ||  ||| | | | ||  |||    |             |||||||||||||||||| |||||||| |||| ||||||  |||||||| |||||||||||||||||| || 
gtgaatggtgctttttcaagaga--gatgataggatgctcttcccttatttttttgacgggagatgctcttcccttattatgttgaaagcaacttacagttcttttgcagATTGTTGCTGGGATTTACTTATCTATCTGGTTAAGTTCTACAAATATTTCAACACCATATAACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctttcctattacactgaattgaactttctgactaccttgtgtactttgcagATTGTTGCTGGCATTTACTTCTCTAACTGGTTGGGTTCTACAGATATTTCAACACCATATAGCAT
                             ttctgac  putative branch site (score: 2)
          tattaca  TA-rich tract