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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtggataattttacacaggagactgatgcataaagaaaattttatgcaagagatactttcatgccactttaaacttttgtgtaacatgtttgatgcagGACTTGAGAAGTAACAGCGGAGTGTTAAACCAGGCCATAAGTATTGGCTCAAAGCAGAGCGATACTGAGCGGCATGTCAGATTTGCCGAGCCTGCATACT

Basic information

species Zea mays
transcript GRMZM2G093239_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093239_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g56860.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------ttgtggataattttacacaggagactg-atgcataaagaaaattttatgcaagagatactttcatgccactttaaacttttgtgtaacatgtttgatgcagGACTTGAGAAGTAACAGCGGAGTGTTAAACCAGGCCATAAGTATTGGCTCAAAGCAGAGCGATACTGAGCGGCATGTCAGATTTGCCGAGCCTGCATACT
                                   ||||  || ||  |  | |    | |  ||   |   || |  ||| || |     |  |  ||      | | || | |  |||| | |||||| |||||||||||||||| |||||||||   ||   ||      | |||||  ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
gttggtatcttttattgtttgctgcattagccacattgtaaattatcgttgatacaccattacatttgtgcggatacctttgtggag----tgatcacaacttgttgtgaattgtcatgta-cttgtttgctgcagGACTTGAGAAGGAACAGCGGACCATTGCTCCGCAATCTTAGTATCAGCTCAAAGCAGAGTGATCCTGAGCGTCATGTCAGATTTGCCGAGCCTGCATACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108752|gb|DV527169.1|DV527169
EST:     CTCCGGTACATGCTATACTCTCCGAGGCAGACAGCTGGAATTATATGCGG                         GACTTGAGAAGTAACAGCGGAGTGTTAAACCAGGCCATAAGTATTGGCTCA
genomic: CTCCGGTACATGCTATACTCTCCGAGGCAGACAGCTGGAATTATATGCGGgtatgtttca ... tttgatgcagGACTTGAGAAGTAACAGCGGAGTGTTAAACCAGGCCATAAGTATTGGCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaagagatactttcatgccactttaaacttttgtgtaacatgtttgatgcagGACTTGAGAAGTAACAGCGGAGTGTTAAACCAGGCCATAAGTATTGGCTCAAAGCAGAGCGATACTGAGCGGCATGTCAGATTTGCCGAGCCTGCATACT
                        tttaaactttt  TA-rich tract