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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagctttactgtcatcgtagatttccttgcacctagtgttgcgttcctgtttaatgttttgctcatgcagtgcagTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCC

Basic information

species Zea mays
transcript GRMZM2G092991_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092991_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g29510.4 (Oryza sativa), 3'ss of exon 4
gtag-agctttactgtcatcgtagatttcct--tgcacctag---tgttgcgt-tcctgtttaatgttttgctcatgcagtgcagTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCC
|||| | |  |||     ||    |||| ||  |||| | |    ||||   | |  | |||| | ||||| ||||||||||||||||||||||||||| |  ||||||||||  | || |||||||| |||||||| || ||  | ||||||||||| |||||||||||||||||||||     
gtagtatccataccacattctataatttactcatgcatcaaagtatgttttttgttttctttactattttgttcatgcagTGCAGTGCTCGCACACTTCGTCTTGAAAGAAAAACTCCATATGTTTGGTGTTGTTGGCTGTATCTTGTGTGTTGTTGGCTCTGTTGGTATAGTTTTGCAT-----

upper sequence: GRMZM2G092991_T04 (Zea mays), 3'ss of exon 4
lower sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------gtagagctttactgtcatcgtagatttccttgcacctagtgttgcgttcctgttta-----atgttttgctcatgcagtgcagTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCC
               | |     |     ||| || ||||   |  |   | | | |  ||| ||   |     ||   |   | |||||| ||||||||||| || || ||| ||||||| || ||||| ||||||||  |  |||||||||| || ||||||||||| |||     |||||| || ||      
gtattcttattgttgaaaatggcatcagtatcatatatttagat-tatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC-----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttccttgcacctagtgttgcgttcctgtttaatgttttgctcatgcagtgcagTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCC
                            gtttaat  putative branch site (score: 4)
                             tttaatgtttt  TA-rich tract