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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggtcctctactcctcttatctgatctgatctgatgcctgctttaggacggtctgttctggtcgcgaaccgtagcatgcatgcatgctcacatggatcgcccgtctgttgccacttgccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCCATCTACCGGGGAGTGACCAG

Basic information

species Zea mays
transcript GRMZM2G091527_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091527_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g12950.1 (Oryza sativa), 3'ss of exon 6
gtactggtcctctactcctcttatctga----tctgatctgatgcctgctttaggacggtctgttctggtcgcgaaccgtagcatgcatgcatgctcacatggatcgcccgtctgttgccacttgccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCCATCTACCGGGGAGTGACCAG
      |     | ||| | ||  ||||    | ||||  |||   |   | ||   | | ||| || ||  | | | ||    |   |  |     | ||| |    |   ||||| |  ||  | |||| ||||||||| ||||| ||||| |||||||||||||||||||| || ||
--gtcagcagcatgctcattttgcctgaattctatgattagattatta--tcagattgatatgtactagtaacaagctgtttttt---taaaaaactatatgtactaacaagctgttcctgctcac-agGAGAAGCAGCGGGTTCTCTCGCGGTGCTTCCATCTACCGGGGAGTAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccgtagcatgcatgcatgctcacatggatcgcccgtctgttgccacttgccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCCATCTACCGGGGAGTGACCAG
                  tgctcac  putative branch site (score: 2)