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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactaatcttaattctatttatgttcatatttgtcaaactattactgtatgccagctaaaactttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAA

Basic information

species Zea mays
transcript GRMZM2G091494_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091494_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 3'ss of exon 4
gtacactaatcttaattctatttatgttcatatttgtcaaactattactgtatgccagctaaaactttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAA
            |||  | |  |   ||   |||| | ||| | ||| | |  |  | | ||   ||| | ||||||||||||||| |||||||||||||||||||  |||||||| || ||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||
-----------gtaaaccaacctgaatt---atttttgaaattcttagtattagataaccaactgttttgctgcagATGAAATTAAAAGGAAGCAACTCCTGAGAAGCTGGGCACTCAAGTGGTTTGATTTCACATGGCAACCTATTGATGAAATTTACTCTTACTTTGGAACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282717|gb|DV022285.1|DV022285
EST:     GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG                         ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
EST: gi|148965874|gb|EE016775.2|EE016775
EST:     GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG                         ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
EST: gi|149077035|gb|EE165691.2|EE165691
EST:     GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG                         ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTT
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttcatatttgtcaaactattactgtatgccagctaaaactttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAA
                                   agctaaa  putative branch site (score: 3)
                                           ctttcgtt  CT-rich tract
     ttcatattt  TA-rich tract