Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcgtttgtcaactcaatctgtttggtttggttttctgggttgctagattttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT

Basic information

species Zea mays
transcript GRMZM2G090904_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 4
-tttcgtttgtcaactcaatctgtttggtttggttttctgggttgctagattttgcgtcatctcttcttac-acttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
  ||| | |||  |     | | |      ||   || | |||||||||||  |   | |  |  | ||   | ||| |||||    | |||| |||  ||||| || ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
aattcatctgtttatgatttttataactgatgaaattattggttgctagatcctttctgagattatattcttatttggtaattgatctctctatttc--cagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G05730.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------tttcgtttgtcaactcaatctgtttggtttggttttctgggttgctagattttgcgtcatctcttctta--cacttgataat---tagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                                                            ||  ||||||       | || ||  ||   || || |  ||||  | | |||  ||  | | || | |     ||| |||    | | |||     ||  |||||||||||| |||||||||||| |||| |||||||| ||  | || |||||||||||  | || || || |||||||||||||| 
ggcaagtcttttggctattttatttggtttactggacatcttatattctgagtgacaaatttcggtttgttttgaagaccttttcagt---gtcttttatgttga-aaaatttaagtagtttattttcagctgattgctaacctattgtttgatggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTATGTTTCTCGTCCTGACAAAATCAGTGCTGCTGAG

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G31470.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------tttcgtttgtcaactcaatctgtttggtttg-gttttctgggttgctagattttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                                                           |  |   | |   ||   | || |   |  | |  || |   |||  | | ||||     | | ||| |   || | |||    ||||     ||  |||||||||||| ||||| |||||| |||| |||||||| ||| |||| |||||||||||  | || || || |||||||||||||| 
gcaagtcttatgggttttctatatgattcactggaaattttatattctgactttctgagtggcaaattttcgcttgttttgctgactcagtgccttttatattgaaaaaatttgtagtttattttcatctgctagctaacct-cttgatggtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G31450.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------tttcgtttgtcaactcaatctgtttggtttggttttctgggttgc--tagattttgcgt----catctc--------ttcttacacttgataattagc---ttgtctaattctt----cagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                                                                   ||| || |    | ||  |   ||  ||||||||| | |  || |  | | ||||   |    ||| |         |  || ||  || |   || |   || | | ||  ||    ||||||||||| ||||| |||||| |||| |||||||| ||  |||| |||||||||||  | || || || |||||||||||||| 
gcaagtcttatggctattttatatgctttattttcatattttgtcagtattccatgtttattgaacattttgtattctgagtctctaatttcagtttggtttgcagacttacaatggcttttatattgaacattttaaatagtttattttcagctgcttgctaacctattatttgatgttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAG

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------tttcgtttgtcaactcaatctgtttggtttg----gttttctgggttgctagattttgc-gtcatctcttcttaca-cttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                      ||   |    |  | ||    | ||         |||||||     |  || |||  | |  ||||    ||    |||  | ||| | || ||   || |  |||| |||||  ||||||||||||| |||||||||||||| |||||||| ||||||||  | || ||||| || || |||||||| 
gtaagttaattactacaagcacttaaataactagttaaagagatatgaaaccaaatgttttctcaaaagaaagttttgactgatatcttagtttctgtcttattgattggtttttcc--ttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 3'ss of exon 4
tttcgtttgtcaactcaatctgtttggttt-ggttttctgggttgctag-attttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
   |||   ||  |    |||    | |||  || || |||  | | || | |||  |  |  |     |    |  |    |   || ||   || |  ||||||||||||| || |||||| | |||||||||||||| ||||| || ||||||||  | || ||||| || ||||||||||| 
--acgtacttcttccttttctacaggttttcagtgttttggacttccagtagtttatggaaattaaatgtgttttgaagtggtctattttccctttttatagGTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG

upper sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S147_100V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------tttcgtttgtc----aactcaatctgtttggtttggttttc--tgggttgctagattttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                             ||||||| ||     ||  | |   ||  | |||||   ||  || || ||     |||  | | ||         | |  ||   | |  ||   | |    ||||| || ||||| || ||||| || ||||| ||||||||||| ||||| |||||||| || || ||||| || ||||||||||| 
gtatgaatccttcttgctcaggcttgtgatttcgttcgtttcagaatcctacaggtgcgttttggaaatcgatgcgtggcatctcttttggacttcgtcgtggttaatgaatgtgtggactgagaattcgaacagGTATGTACTGCAAAGATGAATCTAAGCGAGGAGGTTGATTTAGAAGACTATGTTTCTAGGCCTGATAAAATAAGTGCTGCTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8665869|gb|BE186685.1|BE186685
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5325178|gb|AI783369.1|AI783369
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|31997670|gb|CD661707.1|CD661707
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|32909086|gb|CF013898.1|CF013898
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5714047|gb|AI944032.1|AI944032
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22819685|gb|BU499775.1|BU499775
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|32867797|gb|CF007479.1|CF007479
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|21760243|gb|BQ635784.1|BQ635784
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22521567|gb|BU080378.1|BU080378
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5343230|gb|AI795415.1|AI795415
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|211390318|gb|FL404124.1|FL404124
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATNTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|19437229|gb|BM953639.1|BM953639
EST:     CGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: CGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60672392|gb|DN475143.1|DN475143
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60346910|gb|DN213883.1|DN213883
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5819279|gb|AI987485.1|AI987485
EST:     AGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCNTGAGCGATGAGGTTGATTTGGAAGATTA
genomic: AGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACC-TGAGCGATGAGGTTGATTTGGAAGATTA
EST: gi|19351153|gb|BM895685.1|BM895685
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|78021940|gb|DV490327.1|DV490327
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|32851324|gb|CD991005.1|CD991005
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|37390393|gb|CF632426.1|CF632426
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|31364533|gb|CD448888.1|CD448888
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|32867798|gb|CF007480.1|CF007480
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60400635|gb|DN233442.1|DN233442
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5791247|gb|AI978039.1|AI978039
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCNCTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22490945|gb|BU050868.1|BU050868
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60342267|gb|DN209240.1|DN209240
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22819702|gb|BU499792.1|BU499792
EST:     TCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCCCTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: TCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|149106686|gb|EE188582.2|EE188582
EST:     AAATTGAGTTCCTTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60346677|gb|DN213650.1|DN213650
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60400510|gb|DN233317.1|DN233317
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60344005|gb|DN210978.1|DN210978
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5915467|gb|AW053108.1|AW053108
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGNTTTTCAA                         GTTTGCACTGCCAAAATGAACCTG
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTG
EST: gi|5791424|gb|AI978216.1|AI978216
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|31910991|gb|CD651701.1|CD651701
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5455929|gb|AI833619.1|AI833619
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|28911182|gb|CB331811.1|CB331811
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5871265|gb|AW017736.1|AW017736
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|37374000|gb|CF623328.1|CF623328
EST:     TTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: TTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|6095497|gb|AW120164.1|AW120164
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5871798|gb|AW018269.1|AW018269
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|9951960|gb|BE638543.1|BE638543
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5650157|gb|AI920517.1|AI920517
EST:     AAGAGGCTTGTTTTTCAA                         GTTTGCCCTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|50333574|gb|CO528700.1|CO528700
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|149087905|gb|EE287181.2|EE287181
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5847157|gb|AW000236.1|AW000236
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|211474326|gb|FL411635.1|FL411635
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5847504|gb|AW000583.1|AW000583
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|6095452|gb|AW120119.1|AW120119
EST:     TTGAGTTCCCTCTGCNCAGACCGGGCGTCCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: TTGAGTTCCCTCTGC-CAGACC-GGCGT-CAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|40336171|gb|CK370241.1|CK370241
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|87151720|gb|DY396509.1|DY396509
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|148937643|gb|EC881836.2|EC881836
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60401478|gb|DN234285.1|DN234285
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|78074650|gb|DV503084.1|DV503084
EST:     AAATTGAGTTCCTTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|71762983|gb|DR960920.1|DR960920
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|33096522|gb|CF056516.1|CF056516
EST:     GCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: GCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|6056676|gb|AW091081.1|AW091081
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|110516945|gb|EE021532.1|EE021532
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60357801|gb|DN224774.1|DN224774
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22819703|gb|BU499793.1|BU499793
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22819070|gb|BU499160.1|BU499160
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGGTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGGTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|6194670|gb|AW146774.1|AW146774
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGGTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|148938945|gb|EC883308.2|EC883308
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|211254934|gb|FL426618.1|FL426618
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCYTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|33466524|gb|CF243573.1|CF243573
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|20802317|gb|BQ293367.1|BQ293367
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5296120|gb|AI782995.1|AI782995
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGNTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAG
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAG
EST: gi|31362941|gb|CD447298.1|CD447298
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|60356494|gb|DN223467.1|DN223467
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|110192481|gb|EC874379.1|EC874379
EST:     AAATTGAGTTCCTTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|33770636|gb|CF272930.1|CF272930
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|113702567|gb|EE680071.1|EE680071
EST:     AAATTGAGTTCCTTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|33770883|gb|CF273177.1|CF273177
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|22491127|gb|BU051050.1|BU051050
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|5525873|gb|AI861766.1|AI861766
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCNCTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
EST: gi|87151932|gb|DY396721.1|DY396721
EST:     AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAA                         GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT
genomic: AAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 310

GGCAGACACTCTAGATCCTGCTTTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 363

GGCAGACACTCTAGATCCTGCTTTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 323

GGCAGACACTCTAGATCCTGCTTTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 241

GGCAGACACTCTAGATCCTGCTTTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTCTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTTCAAgtaagagcat ... aattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
                                               ttcttc  CT-rich tract
                           ttgataatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcgtttgtcaactcaatctgtttggtttggttttctgggttgctagattttgcgtcatctcttcttacacttgataattagcttgtctaattcttcagGTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - -aactcaa
- - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - -ggttgct