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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagccattgttcgcagaaatgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcagGTCTGCAGTGGAAGAGGCATTACAAAGACCTCAAACAGATAGCACAATCATTTCGAGTCGTGTAGGGTTCCAATTCCTACTACTACTTTTTTTTTACAGC

Basic information

species Zea mays
transcript GRMZM2G087590_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149109558|gb|EE293367.2|EE293367
EST:     CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACG                         GTCTGCAGTGGAAGAGGCATTACAAAGACCTCAAACAGATAGCACAATCAT
genomic: CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccat ... tcttttgcagGTCTGCAGTGGAAGAGGCATTACAAAGACCTCAAACAGATAGCACAATCAT
EST: gi|149102821|gb|EE188292.2|EE188292
EST:     CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACG                         GTCTGCCGTGGAAGAGGCAATACAA
genomic: CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccat ... tcttttgcagGTCTGCAGTGGAAGAGGCATTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttttattattatcctgaataatacaataaatagctgggaatcttttgcagGTCTGCAGTGGAAGAGGCATTACAAAGACCTCAAACAGATAGCACAATCATTTCGAGTCGTGTAGGGTTCCAATTCCTACTACTACTTTTTTTTTACAGC
                                             tcttttgc  CT-rich tract
     ttttattattatcctg  TA-rich tract