Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcttccgttgccatttatatctcctcttctacatatgtctgtttgttttgctgaaaagaagtccactttgcttctgtagAATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCAAATACTTGTAAATTCCACCATCCGGAACTTTTCAATGTGGTGCCTTCGT

Basic information

species Zea mays
transcript GRMZM2G087032_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087032_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
gtttgtcttccgttgc----------catttatatctcctcttc-tacatatgtctgtttgttttgctgaaaagaagtccactttgcttctgtagAATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCAAATACTTGTAAATTCCACCATCCGGAACTTTTCAATGTGGTGCCTTCGT
||||||  |   ||||          ||| |     |||| ||  ||  |   ||| |||| | | |||||  ||||||   |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||  ||||| |||||||| |||||||| |||||||||||||   || |||| |
gtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctg-tttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67040014|gb|CO466269.1|CO466269
EST:     GAATTGCAGGGAGGGTGCAGCTAAACACATCAGGATATCCACTCCGCCTT                         AATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCA
genomic: GAATTGCAGGGAGGGTGCAGCTAAACACATCAGGATATCCACTCCGCCCGgtttgtcttc ... gcttctgtagAATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctacatatgtctgtttgttttgctgaaaagaagtccactttgcttctgtagAATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCAAATACTTGTAAATTCCACCATCCGGAACTTTTCAATGTGGTGCCTTCGT
                                     tccactttgcttct  CT-rich tract
                 tttgtttt  TA-rich tract