1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acaaaaaccttgttcaaaatatagttacacgttggttaggtctgtagaattaacatgtttggaaatggagttgttacatgattccgccgccggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGGAGCGGAACGAAACCCTGCAGAGGGAGCATGTGGAGGAGCACAGGGCCG
species | Zea mays |
transcript | GRMZM2G085939_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGAT CTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGEST: gi|148972318|gb|EE023225.2|EE023225
genomic: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttct ... cggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
EST: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGAT CTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGEST: gi|211427206|gb|FL437765.1|FL437765
genomic: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttct ... cggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
EST: CCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGAT CTGATSCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGEST: gi|37396513|gb|CF635547.1|CF635547
genomic: CCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttct ... cggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
EST: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGAT CTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGEST: gi|71444159|gb|DR825209.1|DR825209
genomic: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttct ... cggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
EST: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGAT TTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
genomic: CGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttct ... cggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATG
agaattaacatgtttggaaatggagttgttacatgattccgccgccggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGGAGCGGAACGAAACCCTGCAGAGGGAGCATGTGGAGGAGCACAGGGCCG
aattaac putative branch site (score: 26)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaaaccttgttcaaaatatagttacacgttggttaggtctgtagaattaacatgtttggaaatggagttgttacatgattccgccgccggtgtgcagCTGATGCTGGAGGAGGAGAACACGCTGGCAGTGCCGTCGGAGCAGCGGATGGAGCGGAACGAAACCCTGCAGAGGGAGCATGTGGAGGAGCACAGGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacatg