1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactttttccttgagcctacatgtctcaggaccattctgacagctaaaataatttttattttaacatagaacaccaatggattgattacttgttccagatgtttaattgctactgttattacagaaagatattaaaatacaacttttgattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATC
species | Zea mays |
transcript | GRMZM2G085602_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAG GACTTTATGGCCCTCCTGGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTEST: gi|211435652|gb|FL005830.1|FL005830
genomic: CATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
EST: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAG GACTTTATGGCCCTCCTGGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTEST: gi|71429534|gb|DR810584.1|DR810584
genomic: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
EST: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAG GACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTTEST: gi|45567661|gb|CK985682.1|CK985682
genomic: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
EST: CAGAAGGTTACCAAGTATATTGAGAAACTAGAG GACTTTATGGCCCTCCTGGCTTATGAAGAGCCTGAGAAGTCACCTATGTTT
genomic: CAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
ttaattgctactgttattacagaaagatattaaaatacaacttttgattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATC
ttttgat putative branch site (score: 4)
atattaaaatacaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttccttgagcctacatgtctcaggaccattctgacagctaaaataatttttattttaacatagaacaccaatggattgattacttgttccagatgtttaattgctactgttattacagaaagatattaaaatacaacttttgattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA