1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacagtactgtatacatatatactcgaactcgactgttgaaattaaaggcatccaattctgttcaagcttgctcatgccgttgtctctcgttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGGGCCAGTTCACCCGTTAAAAAGGAGCCGCGCCACCTTTTTCTCAGGGGG
species | Zea mays |
transcript | GRMZM2G085467_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGEST: gi|76281063|gb|DV020631.1|DV020631
genomic: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
EST: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGEST: gi|149085916|gb|EE175444.2|EE175444
genomic: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
EST: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGEST: gi|211103379|gb|FL434747.1|FL434747
genomic: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
EST: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGEST: gi|32809414|gb|CD961648.1|CD961648
genomic: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
EST: GATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGEST: gi|18179081|gb|BM380291.1|BM380291
genomic: GATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
EST: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG GTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
genomic: TGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgccc ... ttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAG
aaggcatccaattctgttcaagcttgctcatgccgttgtctctcgttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGGGCCAGTTCACCCGTTAAAAAGGAGCCGCGCCACCTTTTTCTCAGGGGG
tctctcgttcgttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagtactgtatacatatatactcgaactcgactgttgaaattaaaggcatccaattctgttcaagcttgctcatgccgttgtctctcgttcgttccagGTACTGAACGACGGCCGCGCCAGCTGCACCTGCTCCGCCGGCGAGCTGCAGGGCCAGTTCACCCGTTAAAAAGGAGCCGCGCCACCTTTTTCTCAGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - -ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgcc