1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttttttttggcttatcttctgtgtataagtgtatattcataattatatagtctttgtatcatggtataataatgacttaatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGA
species | Zea mays |
transcript | GRMZM2G085438_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|71307182|gb|DR789758.1|DR789758
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|71426297|gb|DR807347.1|DR807347
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|78082086|gb|DV510498.1|DV510498
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAEST: gi|71439017|gb|DR820067.1|DR820067
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAA-GAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCA
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|78106711|gb|DV525129.1|DV525129
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|50333020|gb|CO528146.1|CO528146
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGEST: gi|148973073|gb|EE024135.2|EE024135
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
EST: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAG GCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
genomic: CTTTGATGGAATGGTGGACCATGTCATTGAACAGTATGCACGAATAAGAGgttttttttg ... taatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGG
atattcataattatatagtctttgtatcatggtataataatgacttaatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGA
acttaat putative branch site (score: 4)
ataattatatagtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttttggcttatcttctgtgtataagtgtatattcataattatatagtctttgtatcatggtataataatgacttaatgttcagGCATGAAAGAAGTGTGTGAGCTGCCACACTTTCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA