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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggctttctatatgcatcaatatttgcctatctgatgagtagaatgctttattttctgccaattttcagttttgataacttttaatctttgttttgtagGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG

Basic information

species Zea mays
transcript GRMZM2G085000_T04
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40303424|gb|CK347811.1|CK347811
EST:     GTGAGGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA                         GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
genomic: GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAgtaagtaaat ... tgttttgtagGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
EST: gi|148937629|gb|EC881822.2|EC881822
EST:     GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA                         GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
genomic: GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAgtaagtaaat ... tgttttgtagGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
EST: gi|60352714|gb|DN219687.1|DN219687
EST:     GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA                         GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
genomic: GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAgtaagtaaat ... tgttttgtagGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttattttctgccaattttcagttttgataacttttaatctttgttttgtagGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG
                                         tctttgtttt  CT-rich tract
                         ttttgataacttttaa  TA-rich tract