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gtgaatacgtccagcttcctgcaagtctgcaactgcattttgaagctgtcattcttcatgcacatgaacagttttgttgtttgtgttcaccatgaaaacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGTCCTCGAAAAGGCCCAACATTCCGACCTAAAGTCCTTGAAATGGGTGGAA
species | Zea mays |
transcript | GRMZM2G085000_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGTTGTCCATTTTGTCGAAAG GTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGTEST: gi|211469259|gb|FL411595.1|FL411595
genomic: TGAAGGTTGTCCATTTTGTCGAAAGgtgaatacgt ... aacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGT
EST: TGAAGGTTGTCCATTTTGTCGAAAG GTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGTEST: gi|60394591|gb|DN227461.1|DN227461
genomic: TGAAGGTTGTCCATTTTGTCGAAAGgtgaatacgt ... aacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGT
EST: TGAAGGTTGTCCATTTTGTCGAAAG GTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGT
genomic: TGAAGGTTGTCCATTTTGTCGAAAGgtgaatacgt ... aacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGT
ttcttcatgcacatgaacagttttgttgtttgtgttcaccatgaaaacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGTCCTCGAAAAGGCCCAACATTCCGACCTAAAGTCCTTGAAATGGGTGGAA
aaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatacgtccagcttcctgcaagtctgcaactgcattttgaagctgtcattcttcatgcacatgaacagttttgttgtttgtgttcaccatgaaaacattgcagGTTAGAGAGATGGTATCAGTCTTGGACCTAGATGTACTATTTTACCCCTGTCCTCGAAAAGGCCCAACATTCCGACCTAAAGTCCTTGAAATGGGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA