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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacaggctatgcattgaaattttgaaatatatattcaacaggagttacaacagtttaaataactttactgtttaggttgggaacttaatctgaccttcttaatcgatcaacagGACAAATTGTTGGCATCTCAATAGCCATTTTGATCGTCCTCTTTCTTGTTCAGTGCTTTGGCACAGACAAAGTTGGTTACACATTTGCACCTATAATCTT

Basic information

species Zea mays
transcript GRMZM2G084779_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 4
gtacaacaggctatgcattg-aaattttgaaatatatattcaacaggagttacaacagtttaaataactttactgtttaggttgggaacttaatctgaccttcttaatcg-atcaacagGACAAATTGTTGGCATCTCAATAGCCATTTTGATCGTCCTCTTTCTTGTTCAGTGCTTTGGCACAGACAAAGTTGGTTACACATTTGCACCTATAATCTT
       |  | |  ||||      ||   | | ||| |   | ||    |  || ||   |        ||||| | ||| ||   | || || ||||||| ||   |  ||||||||||||||||| ||||||| |||| || ||| |||| |||||||| ||||||||| | |||||||| ||||||||||||||| ||||||  |||||||||||
-----gtaaaccaatcattatgtgcttctcactgtatttcagagagagacttgaaaagccaag-------tactgctcaggatgt--atttgatttgacctttttggccctatcaacagGACAAATTGCTGGCATCGCAATTGCTATTCTGATTGTCCTCTTCCTTGTTCAGCGTTTTGGCACGGACAAAGTTGGTTACTCATTTGGCCCTATAATCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataactttactgtttaggttgggaacttaatctgaccttcttaatcgatcaacagGACAAATTGTTGGCATCTCAATAGCCATTTTGATCGTCCTCTTTCTTGTTCAGTGCTTTGGCACAGACAAAGTTGGTTACACATTTGCACCTATAATCTT
                       aacttaat  TA-rich tract