1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttttctactccctttgtgcttttacagaagataactttttattcttccttaccaacattcattttgttttttattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTG
species | Zea mays |
transcript | GRMZM2G083095_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTAGGGTATGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGG GTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCEST: gi|60396537|gb|DN229406.1|DN229406
genomic: AACTAGGGTACGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGGgtatgttttc ... tattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTC
EST: AACTAGGGTACGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGG GTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCEST: gi|24773918|gb|CA409172.1|CA409172
genomic: AACTAGGGTACGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGGgtatgttttc ... tattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTC
EST: AACTAGGGTACGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGG GTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTC
genomic: AACTAGGGTACGCAGACTCTGTTTCCGTGGAAGAAATTGGTGGTACTCGGgtatgttttc ... tattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTC
gaagataactttttattcttccttaccaacattcattttgttttttattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTG
tccttac putative branch site (score: 2)
ttcattttgtttttt putative PPT
aacattcattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttctactccctttgtgcttttacagaagataactttttattcttccttaccaacattcattttgttttttattatatagGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT