1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcataatttactgttttgattgcctaaacagatataggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
species | Zea mays |
transcript | GRMZM2G082924_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACEST: gi|31628205|gb|CD526493.1|CD526493
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACEST: gi|91876396|gb|EB406353.1|EB406353
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACEST: gi|60345427|gb|DN212400.1|DN212400
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACEST: gi|44681911|gb|CK786959.1|CK786959
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
ggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
gtctaac putative branch site (score: 2)
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcataatttactgttttgattgcctaaacagatataggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG