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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatttgcatgtctgtggtttgtgtcttgctagttgctacctactccactcaattttatgattgctggttttgtgacaattttatctcctttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT

Basic information

species Zea mays
transcript GRMZM2G082855_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 3'ss of exon 4
aaatttgcatgtctgtggtttgtgtcttgctagttgctacctactccactcaattttatgattgctggttttgtgacaattttatctcctttcttga--cagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT
 |   || |  |||   ||| | ||  |  |||||  |  |         | ||  |  | |||  |   |        || | |||| ||| ||||  ||||||||||||||||||||| ||||| ||||||||||| |||||| |||| || ||||||||||||||||| ||
gatactgaacatctt--gttggagtagtagtagtttttttcatggttttgcgatgcttgggttgtagtggtaacattttttctctctcatttattgatgcagGATTTTGAAGAACAACCAGCTCACGGGACCCATCCCTTCCACATTGTCCCAAATTCCAAATCTCAAGACATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86472326|gb|DY238696.1|DY238696
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|148934014|gb|EC878019.2|EC878019
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTCTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|148940443|gb|EC885241.2|EC885241
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|149079906|gb|EE168912.2|EE168912
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|148941048|gb|EC885905.2|EC885905
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|149096378|gb|EE182110.2|EE182110
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|101383199|gb|EB813654.1|EB813654
EST:     GACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: GACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
EST: gi|148957491|gb|EC903572.2|EC903572
EST:     TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCT                         GATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA
genomic: TATGGAGACATCCCCTTCTCCATCTCTAAGCTCAAGCAACTTGAGGACCTgtaagctcta ... ttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactcaattttatgattgctggttttgtgacaattttatctcctttcttgacagGATTTTGAAGAACAACCAACTCACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT
                                  ttttatctcctttctt  CT-rich tract
      aattttatgatt  TA-rich tract