Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcgaatctcgtgttcgcatcagttgtaataactcgatcgttgtttcagcatcgccgaactgaactgtgcccatgcccttgcctgccggtttccgcagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAGAAGAAGAGTAAGTAGTGTGCCGTGTGCGAACGTTCATACAAACTATTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081977_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g41140.1 (Oryza sativa), 3'ss of exon 5
gtaagtc---gaatctcgtgttcgcatcagttgtaataactcgatc--gttgtttcagcatcgccgaactgaactgtgcccatgcccttgcctgccggtttccgcagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAGAAGAAGAGTAAGTAGTGTGCCGTGTGCGAACGTTCATACAAACTATTGC
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gtaaatccataaccaacatatgccaaattgtgttcttagatgtatcaaatttgttggcgaaaaaaaaggtttactgatcccaagttgcggttcgcca-ttgttgcagGTGATGCTCAAGATGAAGAGCCGGCACGTCGCGGGCACGCTCACCAAGAAGAAGAAGA------------------------------------------
upper sequence: GRMZM2G081977_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv07s0151g00290.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtcgaatctcgtgttcgcatcagttgtaataactcgatcgttgt--ttcagcatcgccgaactgaactgtgcccatgcccttgcct------gccggtttccg-cagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAGAAGAAGAGTAAGTAGTGTGCCGTGTGCGAACGTTCATACAAACTATTGC
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-----gtgggttttacgattgaat--gtataaatatcatgattgtgacaatgaagaattgttgggtccattcctgttttgatttttacagtatcgaatcggtttccttcagGTGATGCTGAAGATGAAAAGCAGACACGTAGCTGGGACCATCACCAAGAAGAAAAAGA------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18170362|gb|BM340202.1|BM340202EST: GGTCGTTGCATTGGAAGGTCGTCTCTGTGTACATCAACCGCGCGGGGCTG GTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAG
genomic: GGTCGTTGCATTGGAAGGTCGTCTCTGTGTACATCAACCGCGCGGGGCTGgtaagtcgaa ... gtttccgcagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagcatcgccgaactgaactgtgcccatgcccttgcctgccggtttccgcagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAGAAGAAGAGTAAGTAGTGTGCCGTGTGCGAACGTTCATACAAACTATTGC
tttccgc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaagtcgaatctcgtgttcgcatcagttgtaataactcgatcgttgtttcagcatcgccgaactgaactgtgcccatgcccttgcctgccggtttccgcagGTGATGCTGAAGATGAAGAGTCGGCACGTCGGTGGCACCATCACGAAGAAGAAGAAGAGTAAGTAGTGTGCCGTGTGCGAACGTTCATACAAACTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG